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Articles Cited by. Proceedings of the National Academy of Sciences 52 , , Proceedings of the National Academy of Sciences 29 , , Determining the neurotransmitter concentration profile at active synapses. Mol Neurobiol. Neuronal transporters regulate glutamate clearance, NMDA receptor activation, and synaptic plasticity in the hippocampus.
Closing the loop in primate prefrontal cortex: Inter-laminar processing. European Journal of Neuroscience, 12 11 Shu, Y. Rosenzweig Eds. Identification of stable spike-timing-dependent plasticity from spiking activity with generalized multilinear modeling. Diffusion Fundamentals , PLoS Computational Biology.
A spatial extension to the [pi] Calculus. Electronic Notes in Theoretical Computer Science , 3 Receptor noise and directional sensing in eukaryotic chemotaxis. Phys Rev Lett. Receptor noise limitations on chemotactic sensing. Diffusion in brain extracellular space. Physiol Rev. Snapshots of nuclear pore complexes in action captured by cryo-electron tomography. Nature , Advances in Neural Information Processing Systems 19, Diffusion Fundamentals , Acceleration of AMPA receptor kinetics underlies temperature-dependent changes in synaptic strength at the rat calyx of Held.
J Physiol. Quantifying noise levels of intercellular signals.
Division accuracy in a stochastic model of Min oscillations in Escherichia coli. A 3D Monte Carlo analysis of the role of dyadic space geometry in spark generation. Current Bioinformatics , —6. A new era in computational neuroscience. Neuroinformatics , 3 2 Evidence for ectopic neurotransmission at a neuronal synapse.
Science , Deriving the glutamate clearance time course from transporter currents in CA1 hippocampal astrocytes: transmitter uptake gets faster during development. Space as the final frontier in stochastic simulations of biological systems.
FEBS Letters , 8 Factors governing diffusing molecular signals in brain extracellular space. J Neural Transm. A computational model of the ribbon synapse.
J Neurosci Methods. Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.
Cell cavities increase tortuosity in brain extracellular space. J Theor Biol. A large scale Monte Carlo simulator for cellular microphysiology. Parallel and Distributed Processing Symposium, Proceedings. High Perform.
A model of effective diffusion and tortuosity in the extracellular space of the brain. Postfusional control of quantal current shape. Neuron, Three-dimensional morphology of a central excitatory synapse: the mossy fiber bouton.
Spatially realistic computational physiology: past, present, and future. Joubert, G, et al. Elsevier, Amsterdam, Maximum geometrical hindrance to diffusion in brain extracellular space surrounding uniformly spaced convex cells. Spatial distribution of calcium entry evoked by single action potentials within the presynaptic active zone. NetSolve: Past, present, and future; a look at a Grid enabled server. Wiley: Chichester, Morphology of central synapses: from structure to function. Society for Neuroscience Abstracts 29, Biophysical Journal , 83 5 Complexity of calcium signaling in synaptic spines.
BioEssays , — Novel delta subunit mutation in slow-channel syndrome causes severe weakness by novel mechanisms.
In Transmembrane Transporters, ed. Quick M.
Wiley, New York, Effect of brain extracellular space geometry on molecular diffusion revealed by Monte Carlo simulation. Program No. Distributing MCell simulations on the grid. Neuronal glutamate transporters limit activation of NMDA receptors by neurotransmitter spillover on CA1 pyramidal cells. An MCell model of calcium dynamics and frequency-dependence of calmodulin activation in dendritic spines.
Neurocomputing , Pre- and postsynaptic mechanisms of spontaneous, excitatory postsynaptic currents in the salamander retina. Roth, A. Spatiotemporal dynamics of transmitter diffusion at excitatory synapses in the cerebellar cortex.
Society for Neuroscience Abstracts 27,